Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_03780 | Not Available | Negative | 3736378 - 3739347 | 107064.0 |
| hypothetical protein | BACCOPRO_03781 | Not Available | Positive | 3739758 - 3739883 | 4462.64 |
| site-specific recombinase, phage integrase family | BACCOPRO_03782 | Not Available | Negative | 3740080 - 3741072 | 38223.4 |
| hypothetical protein | BACCOPRO_03783 | Not Available | Positive | 3741077 - 3741199 | 4668.63 |
| rna polymerase sigma factor, sigma-70 family | BACCOPRO_03784 | Not Available | Positive | 3741336 - 3741806 | 18612.5 |
| sigma factor regulatory protein, fecr/pupr family | BACCOPRO_03785 | Not Available | Positive | 3741924 - 3742919 | 37548.5 |
| tonb-linked outer membrane protein, susc/raga family | BACCOPRO_03786 | Not Available | Positive | 3743191 - 3746502 | 122902.0 |
| susd family protein | BACCOPRO_03787 | Not Available | Positive | 3746514 - 3748445 | 72512.7 |
| hypothetical protein | BACCOPRO_03788 | Not Available | Positive | 3748439 - 3748927 | 17735.2 |
| alpha-n-acetylglucosaminidase (naglu) | BACCOPRO_03789 | Not Available | Positive | 3748982 - 3751495 | 96235.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


