Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_03760 | Not Available | Negative | 3714650 - 3714793 | 5187.43 |
| site-specific recombinase, phage integrase family | BACCOPRO_03761 | Not Available | Positive | 3715111 - 3716340 | 47283.9 |
| site-specific recombinase, phage integrase family | BACCOPRO_03762 | Not Available | Positive | 3716372 - 3717595 | 46409.8 |
| hypothetical protein | BACCOPRO_03763 | Not Available | Positive | 3717592 - 3717954 | 13752.8 |
| dna binding domain, excisionase family | BACCOPRO_03764 | Not Available | Negative | 3718197 - 3718505 | 12220.0 |
| hypothetical protein | BACCOPRO_03765 | Not Available | Negative | 3718588 - 3718899 | 12388.8 |
| hypothetical protein | BACCOPRO_03766 | Not Available | Positive | 3718954 - 3719283 | 12505.8 |
| hypothetical protein | BACCOPRO_03767 | Not Available | Positive | 3719297 - 3719779 | 18373.8 |
| hypothetical protein | BACCOPRO_03768 | Not Available | Positive | 3719964 - 3720377 | 15470.7 |
| relaxase/mobilization nuclease domain protein | BACCOPRO_03769 | Not Available | Positive | 3720374 - 3721324 | 36102.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


