Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_03700 | Not Available | Negative | 3667349 - 3667534 | 6700.97 |
| putative dna-binding protein | BACCOPRO_03701 | Not Available | Negative | 3667592 - 3668092 | 18132.7 |
| hypothetical protein | BACCOPRO_03702 | Not Available | Negative | 3668086 - 3668388 | 11535.6 |
| hypothetical protein | BACCOPRO_03703 | Not Available | Positive | 3668441 - 3668569 | 4827.67 |
| hypothetical protein | BACCOPRO_03704 | Not Available | Positive | 3668583 - 3668801 | 7953.69 |
| polysaccharide biosynthesis/export protein | BACCOPRO_03705 | Not Available | Positive | 3668846 - 3671257 | 88817.2 |
| chain length determinant protein | BACCOPRO_03706 | Not Available | Positive | 3671263 - 3672402 | 41440.6 |
| hypothetical protein | BACCOPRO_03707 | Not Available | Negative | 3672418 - 3673149 | 28020.5 |
| hypothetical protein | BACCOPRO_03708 | Not Available | Negative | 3673150 - 3673575 | 16587.0 |
| atpase family associated with various cellular activities (aaa) | BACCOPRO_03709 | Not Available | Negative | 3673569 - 3675680 | 78613.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


