Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | BACCOPRO_03690 | Not Available | Positive | 3652605 - 3655868 | 121227.0 |
| susd family protein | BACCOPRO_03691 | Not Available | Positive | 3655893 - 3657689 | 67680.9 |
| f5/8 type c domain protein | BACCOPRO_03692 | Not Available | Positive | 3657867 - 3660026 | 80569.8 |
| trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase | BACCOPRO_03693 | Not Available | Negative | 3660029 - 3661186 | 43369.0 |
| hypothetical protein | BACCOPRO_03694 | Not Available | Negative | 3661183 - 3661308 | 4835.08 |
| hypothetical protein | BACCOPRO_03695 | Not Available | Positive | 3661338 - 3661793 | 16762.5 |
| leucine rich repeat protein | BACCOPRO_03696 | Not Available | Positive | 3661815 - 3664016 | 83279.6 |
| hypothetical protein | BACCOPRO_03697 | Not Available | Negative | 3664100 - 3665179 | 38253.1 |
| abi-like protein | BACCOPRO_03698 | Not Available | Negative | 3665305 - 3666204 | 35217.5 |
| hypothetical protein | BACCOPRO_03699 | Not Available | Positive | 3666595 - 3667194 | 23565.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


