Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | BACCOPRO_03670 | Not Available | Negative | 3622336 - 3624636 | 85244.5 |
| pqq enzyme repeat protein | BACCOPRO_03671 | Not Available | Negative | 3625245 - 3627740 | 91599.5 |
| susd family protein | BACCOPRO_03672 | Not Available | Negative | 3627844 - 3629646 | 68574.8 |
| tonb-linked outer membrane protein, susc/raga family | BACCOPRO_03673 | Not Available | Negative | 3629659 - 3633000 | 123869.0 |
| hypothetical protein | BACCOPRO_03674 | Not Available | Positive | 3633017 - 3633163 | 5517.86 |
| sigma factor regulatory protein, fecr/pupr family | BACCOPRO_03675 | Not Available | Negative | 3633247 - 3634254 | 38823.7 |
| sigma-70 region 2 | BACCOPRO_03677 | Not Available | Negative | 3634333 - 3634908 | 22621.1 |
| hypothetical protein | BACCOPRO_03676 | Not Available | Positive | 3634903 - 3635241 | 13067.0 |
| f5/8 type c domain protein | BACCOPRO_03678 | Not Available | Positive | 3635262 - 3638873 | 135454.0 |
| glycosyl hydrolase, family 18 | BACCOPRO_03679 | Not Available | Positive | 3638992 - 3640002 | 37368.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


