Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-54 interaction domain protein | BACCOPRO_03640 | Not Available | Positive | 3587906 - 3589021 | 41852.7 |
| hypothetical protein | BACCOPRO_03642 | Not Available | Negative | 3589708 - 3591198 | 54965.2 |
| hypothetical protein | BACCOPRO_03641 | Not Available | Positive | 3591197 - 3591418 | 8224.88 |
| glutamate dehydrogenase, nad-specific | BACCOPRO_03643 | Not Available | Negative | 3591588 - 3593054 | 53749.8 |
| pyruvate phosphate dikinase, pep/pyruvate binding domain protein | BACCOPRO_03644 | Not Available | Positive | 3593119 - 3596076 | 113102.0 |
| hypothetical protein | BACCOPRO_03645 | Not Available | Positive | 3596125 - 3596244 | 4623.55 |
| hypothetical protein | BACCOPRO_03646 | Not Available | Positive | 3596446 - 3597615 | 41269.6 |
| hypothetical protein | BACCOPRO_03647 | Not Available | Negative | 3597699 - 3598481 | 29116.8 |
| hypothetical protein | BACCOPRO_03648 | Not Available | Negative | 3598527 - 3599654 | 40813.5 |
| transcriptional regulator, arac family | BACCOPRO_03649 | Not Available | Negative | 3599680 - 3600552 | 33296.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


