Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_03610 | Not Available | Positive | 3561610 - 3562617 | 38946.0 |
| tetrapyrrole methylase | BACCOPRO_03611 | Not Available | Positive | 3562643 - 3563350 | 26256.0 |
| hypothetical protein | BACCOPRO_03612 | Not Available | Negative | 3563408 - 3564409 | 38378.4 |
| putative lipoyl synthase | BACCOPRO_03614 | Not Available | Negative | 3564564 - 3565142 | 21376.5 |
| hypothetical protein | BACCOPRO_03613 | Not Available | Positive | 3565128 - 3565445 | 11799.0 |
| peptidase, s9a/b/c family, catalytic domain protein | BACCOPRO_03615 | Not Available | Negative | 3565442 - 3567643 | 83005.5 |
| tonb family domain protein | BACCOPRO_03616 | Not Available | Negative | 3567749 - 3569128 | 51659.8 |
| hypothetical protein | BACCOPRO_03617 | Not Available | Negative | 3569129 - 3570043 | 34310.1 |
| hypothetical protein | BACCOPRO_03618 | Not Available | Negative | 3570059 - 3571216 | 43257.8 |
| auxiliary transport protein, membrane fusion protein (mfp) family protein | BACCOPRO_03619 | Not Available | Negative | 3571227 - 3572219 | 36015.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


