Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-met | Not Available | Not Available | Positive | 3554360 - 3554433 | Not Available |
| hypothetical protein | BACCOPRO_03601 | Not Available | Negative | 3554664 - 3554810 | 5429.45 |
| hypothetical protein | BACCOPRO_03602 | Not Available | Negative | 3554970 - 3555722 | 27910.7 |
| putative phosphoglycolate phosphatase, bacterial | BACCOPRO_03603 | Not Available | Negative | 3555825 - 3556487 | 24540.0 |
| nitroreductase family protein | BACCOPRO_03604 | Not Available | Positive | 3556562 - 3557065 | 19004.8 |
| sodium pump decarboxylase, gamma subunit | BACCOPRO_03605 | Not Available | Positive | 3557168 - 3557422 | 8894.36 |
| biotin-requiring enzyme | BACCOPRO_03606 | Not Available | Positive | 3557460 - 3559319 | 68842.5 |
| sodium ion-translocating decarboxylase, beta subunit | BACCOPRO_03607 | Not Available | Positive | 3559319 - 3560554 | 44239.9 |
| hypothetical protein | BACCOPRO_03608 | Not Available | Positive | 3560590 - 3560733 | 5666.93 |
| hypothetical protein | BACCOPRO_03609 | Not Available | Positive | 3560741 - 3561598 | 31384.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


