Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-lactamase | BACCOPRO_03590 | Not Available | Positive | 3543289 - 3546255 | 109336.0 |
| 4fe-4s binding domain protein | BACCOPRO_03591 | Not Available | Positive | 3546376 - 3546543 | 5631.56 |
| cysteine synthase a | BACCOPRO_03592 | Not Available | Positive | 3546675 - 3547622 | 33515.5 |
| transcriptional regulator, luxr family | BACCOPRO_03593 | Not Available | Negative | 3547638 - 3548288 | 24244.3 |
| aminotransferase, class i/ii | BACCOPRO_03594 | Not Available | Negative | 3548464 - 3549657 | 43363.0 |
| hypothetical protein | BACCOPRO_03595 | Not Available | Negative | 3549705 - 3550406 | 26080.8 |
| 3,4-dihydroxy-2-butanone-4-phosphate synthase | BACCOPRO_03596 | Not Available | Negative | 3550421 - 3551635 | 45021.3 |
| permease, yjgp/yjgq family | BACCOPRO_03597 | Not Available | Negative | 3551653 - 3553548 | 72314.7 |
| hypothetical protein | BACCOPRO_03598 | Not Available | Negative | 3553625 - 3554005 | 14793.5 |
| Trna-met | Not Available | Not Available | Positive | 3554228 - 3554304 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


