Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s11 | BACCOPRO_00350 | Not Available | Positive | 356285 - 356674 | 13894.8 |
| ribosomal protein s4 | BACCOPRO_00351 | Not Available | Positive | 356790 - 357395 | 22548.3 |
| dna-directed rna polymerase, alpha subunit | BACCOPRO_00352 | Not Available | Positive | 357407 - 358399 | 37549.1 |
| ribosomal protein l17 | BACCOPRO_00353 | Not Available | Positive | 358403 - 358891 | 18082.7 |
| polyribonucleotide nucleotidyltransferase | BACCOPRO_00354 | Not Available | Negative | 359278 - 361437 | 79465.7 |
| hypothetical protein | BACCOPRO_00355 | Not Available | Positive | 361719 - 362870 | 42962.2 |
| hypothetical protein | BACCOPRO_00356 | Not Available | Positive | 362909 - 363043 | 5014.48 |
| prokaryotic transcription elongation factor, grea/greb domain protein | BACCOPRO_00357 | Not Available | Positive | 363080 - 363544 | 16704.3 |
| histidine triad domain protein | BACCOPRO_00358 | Not Available | Positive | 363599 - 364006 | 15101.3 |
| tonb-dependent receptor plug domain protein | BACCOPRO_00359 | Not Available | Positive | 364090 - 366468 | 88926.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


