Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane efflux protein | BACCOPRO_03580 | Not Available | Negative | 3533929 - 3535260 | 49953.7 |
| efflux transporter, rnd family, mfp subunit | BACCOPRO_03581 | Not Available | Negative | 3535264 - 3536361 | 40052.3 |
| efflux abc transporter, permease protein | BACCOPRO_03582 | Not Available | Negative | 3536428 - 3537672 | 45777.9 |
| efflux abc transporter, permease protein | BACCOPRO_03583 | Not Available | Negative | 3537675 - 3538925 | 46191.2 |
| abc transporter, atp-binding protein | BACCOPRO_03584 | Not Available | Negative | 3538934 - 3539653 | 26791.5 |
| rok family protein | BACCOPRO_03585 | Not Available | Positive | 3539796 - 3540770 | 34325.5 |
| ribosomal protein l19 | BACCOPRO_03586 | Not Available | Negative | 3541066 - 3541419 | 13164.2 |
| hypothetical protein | BACCOPRO_03587 | Not Available | Negative | 3541464 - 3541589 | 4910.15 |
| 5'-nucleotidase, c-terminal domain protein | BACCOPRO_03588 | Not Available | Positive | 3541637 - 3542407 | 28056.8 |
| ser/thr phosphatase family protein | BACCOPRO_03589 | Not Available | Positive | 3542410 - 3543285 | 32952.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


