Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_03570 | Not Available | Positive | 3524919 - 3525755 | 31886.8 |
| hypothetical protein | BACCOPRO_03571 | Not Available | Positive | 3525939 - 3526802 | 34042.6 |
| hypothetical protein | BACCOPRO_03572 | Not Available | Positive | 3526826 - 3526969 | 5532.75 |
| outer membrane efflux protein | BACCOPRO_03573 | Not Available | Negative | 3527031 - 3527588 | 20354.2 |
| outer membrane efflux protein | BACCOPRO_03574 | Not Available | Negative | 3527616 - 3528395 | 28817.8 |
| rnd transporter, hae1 family | BACCOPRO_03575 | Not Available | Negative | 3528401 - 3531375 | 108799.0 |
| hypothetical protein | BACCOPRO_03576 | Not Available | Negative | 3531376 - 3531560 | 6710.41 |
| hypothetical protein | BACCOPRO_03577 | Not Available | Negative | 3531574 - 3531972 | 14019.1 |
| hypothetical protein | BACCOPRO_03578 | Not Available | Negative | 3531976 - 3532776 | 29726.5 |
| transcriptional regulator, arac family | BACCOPRO_03579 | Not Available | Positive | 3532875 - 3533798 | 36233.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


