Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transporter, cation channel family protein | BACCOPRO_03560 | Not Available | Negative | 3514236 - 3515141 | 35221.6 |
| hypothetical protein | BACCOPRO_03561 | Not Available | Negative | 3515138 - 3515257 | 4350.19 |
| efflux transporter, outer membrane factor lipoprotein, nodt family | BACCOPRO_03562 | Not Available | Negative | 3515281 - 3516645 | 50125.2 |
| rnd transporter, hae1 family | BACCOPRO_03563 | Not Available | Negative | 3516674 - 3519808 | 113576.0 |
| efflux transporter, rnd family, mfp subunit | BACCOPRO_03564 | Not Available | Negative | 3519831 - 3520955 | 40559.4 |
| transcriptional regulator, arac family | BACCOPRO_03565 | Not Available | Positive | 3521218 - 3522144 | 35497.9 |
| hypothetical protein | BACCOPRO_03566 | Not Available | Negative | 3522278 - 3523279 | 38237.6 |
| hypothetical protein | BACCOPRO_03567 | Not Available | Negative | 3523353 - 3523583 | 8148.88 |
| hypothetical protein | BACCOPRO_03568 | Not Available | Negative | 3523594 - 3523725 | 5019.17 |
| endonuclease/exonuclease/phosphatase family protein | BACCOPRO_03569 | Not Available | Negative | 3523867 - 3524733 | 32773.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


