Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_03540 | Not Available | Negative | 3491762 - 3492307 | 20661.9 |
| phosphoadenosine phosphosulfate reductase family protein | BACCOPRO_03541 | Not Available | Negative | 3492298 - 3493596 | 52183.7 |
| hypothetical protein | BACCOPRO_03542 | Not Available | Negative | 3493562 - 3493993 | 16807.1 |
| abc transporter, atp-binding protein | BACCOPRO_03543 | Not Available | Negative | 3494027 - 3495031 | 37168.7 |
| iron chelate uptake abc transporter, fect family, permease protein | BACCOPRO_03544 | Not Available | Negative | 3495028 - 3496053 | 35330.8 |
| periplasmic binding protein | BACCOPRO_03545 | Not Available | Negative | 3496050 - 3497189 | 42572.0 |
| hypothetical protein | BACCOPRO_03546 | Not Available | Negative | 3497200 - 3498288 | 39567.6 |
| tonb-dependent receptor | BACCOPRO_03547 | Not Available | Negative | 3498303 - 3500318 | 76498.3 |
| hypothetical protein | BACCOPRO_03548 | Not Available | Negative | 3500548 - 3500691 | 5173.18 |
| hypothetical protein | BACCOPRO_03549 | Not Available | Positive | 3500706 - 3500894 | 6917.34 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


