Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mate efflux family protein | BACCOPRO_03520 | Not Available | Positive | 3473800 - 3475155 | 48366.6 |
| hypothetical protein | BACCOPRO_03521 | Not Available | Negative | 3475156 - 3476154 | 39284.4 |
| hypothetical protein | BACCOPRO_03523 | Not Available | Negative | 3476166 - 3476990 | 31273.7 |
| hypothetical protein | BACCOPRO_03522 | Not Available | Positive | 3476989 - 3477159 | 6332.83 |
| putative dna helicase | BACCOPRO_03524 | Not Available | Positive | 3477170 - 3478993 | 70175.5 |
| trka c-terminal domain protein | BACCOPRO_03525 | Not Available | Positive | 3479075 - 3480673 | 56612.7 |
| transporter, small conductance mechanosensitive ion channel mscs family protein | BACCOPRO_03526 | Not Available | Negative | 3480651 - 3481853 | 45793.6 |
| hypothetical protein | BACCOPRO_03527 | Not Available | Positive | 3481928 - 3482326 | 15168.6 |
| antioxidant, ahpc/tsa family | BACCOPRO_03528 | Not Available | Positive | 3482326 - 3482844 | 19402.2 |
| electron transfer flavoprotein domain protein | BACCOPRO_03529 | Not Available | Positive | 3482950 - 3483837 | 31547.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


