Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide-methionine (s)-s-oxide reductase | BACCOPRO_03500 | Not Available | Negative | 3453428 - 3453913 | 18456.6 |
| hypothetical protein | BACCOPRO_03501 | Not Available | Positive | 3453965 - 3454104 | 5705.32 |
| tetratricopeptide repeat protein | BACCOPRO_03502 | Not Available | Positive | 3454105 - 3454909 | 30568.0 |
| atp-dependent dna helicase recq | BACCOPRO_03503 | Not Available | Negative | 3454942 - 3456768 | 69301.6 |
| transcriptional regulator, arac family | BACCOPRO_03504 | Not Available | Positive | 3456984 - 3457451 | 18348.0 |
| hypothetical protein | BACCOPRO_03505 | Not Available | Positive | 3457463 - 3458003 | 20970.9 |
| peptidase family m49 | BACCOPRO_03506 | Not Available | Positive | 3458004 - 3459462 | 54861.7 |
| hypothetical protein | BACCOPRO_03507 | Not Available | Positive | 3459503 - 3460177 | 25825.3 |
| transcriptional regulator, fur family | BACCOPRO_03508 | Not Available | Positive | 3460231 - 3460692 | 18102.8 |
| adenylosuccinate synthase | BACCOPRO_03509 | Not Available | Positive | 3460712 - 3461986 | 46847.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


