Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosomal protein l6 | BACCOPRO_00340 | Not Available | Positive | 351224 - 351793 | 20836.5 |
| ribosomal protein l18 | BACCOPRO_00341 | Not Available | Positive | 351815 - 352156 | 12545.4 |
| ribosomal protein s5 | BACCOPRO_00342 | Not Available | Positive | 352163 - 352678 | 17851.8 |
| ribosomal protein l30 | BACCOPRO_00343 | Not Available | Positive | 352690 - 352866 | 6477.19 |
| ribosomal protein l15 | BACCOPRO_00344 | Not Available | Positive | 352897 - 353343 | 15598.0 |
| preprotein translocase, secy subunit | BACCOPRO_00345 | Not Available | Positive | 353348 - 354418 | 39250.2 |
| hypothetical protein | BACCOPRO_00346 | Not Available | Positive | 354447 - 354695 | 8709.82 |
| methionine aminopeptidase, type i | BACCOPRO_00347 | Not Available | Positive | 354707 - 355507 | 29192.2 |
| translation initiation factor if-1 | BACCOPRO_00348 | Not Available | Positive | 355509 - 355727 | 8235.14 |
| 30s ribosomal protein s13 | BACCOPRO_00349 | Not Available | Positive | 355893 - 356273 | 14135.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


