Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helicase c-terminal domain protein | BACCOPRO_03460 | Not Available | Positive | 3413439 - 3418418 | 189294.0 |
| kap family p-loop domain protein | BACCOPRO_03461 | Not Available | Negative | 3418660 - 3420549 | 72914.6 |
| hypothetical protein | BACCOPRO_03462 | Not Available | Negative | 3420772 - 3421161 | 14839.9 |
| frg domain protein | BACCOPRO_03463 | Not Available | Negative | 3421493 - 3422977 | 57594.6 |
| hypothetical protein | BACCOPRO_03464 | Not Available | Negative | 3423415 - 3423972 | 21813.2 |
| hypothetical protein | BACCOPRO_03465 | Not Available | Negative | 3423975 - 3424419 | 16647.9 |
| site-specific recombinase, phage integrase family | BACCOPRO_03466 | Not Available | Positive | 3424420 - 3425376 | 36717.4 |
| hypothetical protein | BACCOPRO_03467 | Not Available | Positive | 3425378 - 3426382 | 38886.6 |
| hypothetical protein | BACCOPRO_03468 | Not Available | Positive | 3426718 - 3427455 | 28206.4 |
| hypothetical protein | BACCOPRO_03469 | Not Available | Positive | 3427501 - 3427959 | 16808.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


