Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methylmalonyl-coa mutase | BACCOPRO_03360 | Not Available | Negative | 3330762 - 3332912 | 79354.1 |
| methylmalonyl-coa mutase, small subunit | BACCOPRO_03361 | Not Available | Negative | 3332918 - 3334837 | 71182.8 |
| trka c-terminal domain protein | BACCOPRO_03362 | Not Available | Positive | 3335064 - 3336782 | 61708.9 |
| putative crispr-associated protein csc1 | BACCOPRO_03363 | Not Available | Positive | 3336939 - 3338588 | 62539.3 |
| udp-n-acetylglucosamine 2-epimerase | BACCOPRO_03364 | Not Available | Negative | 3338797 - 3339885 | 40117.4 |
| galactokinase | BACCOPRO_03365 | Not Available | Negative | 3340061 - 3341215 | 42892.0 |
| transporter, major facilitator family protein | BACCOPRO_03366 | Not Available | Negative | 3341264 - 3342757 | 53005.3 |
| aldose 1-epimerase | BACCOPRO_03367 | Not Available | Negative | 3342796 - 3343890 | 40145.1 |
| bifunctional protein folc | BACCOPRO_03368 | Not Available | Negative | 3343985 - 3345271 | 47654.6 |
| arylsulfatase | BACCOPRO_03369 | Not Available | Negative | 3345347 - 3346891 | 57353.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


