Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-n-acetylglucosaminidase (naglu) | BACCOPRO_03350 | Not Available | Positive | 3316177 - 3318084 | 72192.4 |
| hypothetical protein | BACCOPRO_03351 | Not Available | Positive | 3318155 - 3318448 | 11187.1 |
| hypothetical protein | BACCOPRO_03352 | Not Available | Negative | 3318499 - 3318651 | 5822.19 |
| hypothetical protein | BACCOPRO_03353 | Not Available | Positive | 3318655 - 3318795 | 5341.58 |
| glycosyl hydrolase, family 88 | BACCOPRO_03354 | Not Available | Positive | 3318871 - 3321816 | 112053.0 |
| polysaccharide lyase family 8, super-sandwich domain protein | BACCOPRO_03355 | Not Available | Positive | 3321865 - 3323320 | 55552.8 |
| hypothetical protein | BACCOPRO_03356 | Not Available | Positive | 3323277 - 3324023 | 27871.4 |
| atpase/histidine kinase/dna gyrase b/hsp90 domain protein | BACCOPRO_03357 | Not Available | Negative | 3323993 - 3328021 | 154056.0 |
| glutamate 5-kinase | BACCOPRO_03358 | Not Available | Positive | 3328302 - 3329399 | 40108.5 |
| glutamate-5-semialdehyde dehydrogenase | BACCOPRO_03359 | Not Available | Positive | 3329396 - 3330646 | 46051.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


