Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative dna polymerase iv | BACCOPRO_03310 | Not Available | Negative | 3272479 - 3273573 | 41556.1 |
| sua5/ycio/yrdc/ywlc family protein | BACCOPRO_03311 | Not Available | Positive | 3273673 - 3274239 | 20927.2 |
| chloride transporter, clc family | BACCOPRO_03312 | Not Available | Positive | 3274258 - 3276057 | 66911.9 |
| methionyl-trna formyltransferase | BACCOPRO_03313 | Not Available | Positive | 3276077 - 3277048 | 36356.4 |
| sigma-70 region 2 | BACCOPRO_03314 | Not Available | Positive | 3277129 - 3277674 | 20891.2 |
| hypothetical protein | BACCOPRO_03315 | Not Available | Positive | 3277675 - 3278970 | 48526.3 |
| hypothetical protein | BACCOPRO_03316 | Not Available | Positive | 3278970 - 3279254 | 10966.3 |
| ribulose-phosphate 3-epimerase | BACCOPRO_03317 | Not Available | Positive | 3279267 - 3279926 | 23917.5 |
| comec/rec2-like protein | BACCOPRO_03318 | Not Available | Positive | 3279979 - 3281928 | 72287.9 |
| hypothetical protein | BACCOPRO_03319 | Not Available | Positive | 3282198 - 3282622 | 15587.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


