Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| membrane protein, marc family | BACCOPRO_03300 | Not Available | Negative | 3255627 - 3256277 | 23972.4 |
| peptidase m16 inactive domain protein | BACCOPRO_03301 | Not Available | Positive | 3256425 - 3259235 | 105864.0 |
| dna repair protein rada | BACCOPRO_03302 | Not Available | Negative | 3259365 - 3260738 | 50097.0 |
| hypothetical protein | BACCOPRO_03303 | Not Available | Negative | 3261110 - 3261232 | 4830.24 |
| homoserine dehydrogenase | BACCOPRO_03304 | Not Available | Positive | 3261238 - 3263670 | 88551.4 |
| proposed homoserine kinase | BACCOPRO_03305 | Not Available | Positive | 3263700 - 3264914 | 44513.4 |
| threonine synthase | BACCOPRO_03306 | Not Available | Positive | 3264945 - 3266246 | 48348.7 |
| putative trna (guanine-n(7)-)-methyltransferase | BACCOPRO_03307 | Not Available | Positive | 3266416 - 3267174 | 29621.3 |
| atp-binding protein, mrp/nbp35 family | BACCOPRO_03308 | Not Available | Positive | 3267183 - 3268283 | 39524.8 |
| beta galactosidase small chain | BACCOPRO_03309 | Not Available | Positive | 3268322 - 3272368 | 150636.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


