Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_03240 | Not Available | Positive | 3188925 - 3189872 | 35190.0 |
| histidine kinase | BACCOPRO_03241 | Not Available | Positive | 3189882 - 3190922 | 40186.3 |
| lyttr dna-binding domain protein | BACCOPRO_03242 | Not Available | Positive | 3190919 - 3191680 | 28881.0 |
| hypothetical protein | BACCOPRO_03243 | Not Available | Positive | 3191773 - 3192192 | 15606.5 |
| efflux transporter, rnd family, mfp subunit | BACCOPRO_03244 | Not Available | Positive | 3192328 - 3193512 | 42593.1 |
| heavy metal efflux pump, czca family | BACCOPRO_03245 | Not Available | Positive | 3193524 - 3196619 | 112542.0 |
| hypothetical protein | BACCOPRO_03246 | Not Available | Positive | 3196656 - 3197840 | 44629.4 |
| hypothetical protein | BACCOPRO_03247 | Not Available | Negative | 3198094 - 3198279 | 7334.23 |
| homoserine o-succinyltransferase | BACCOPRO_03248 | Not Available | Positive | 3198381 - 3199307 | 36229.2 |
| peptidase, u32 family | BACCOPRO_03249 | Not Available | Positive | 3199304 - 3201133 | 69225.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


