Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_03230 | Not Available | Negative | 3174611 - 3175669 | 40859.3 |
| Trna-leu | Not Available | Not Available | Positive | 3175828 - 3175911 | Not Available |
| peptidase, s41 family | BACCOPRO_03232 | Not Available | Negative | 3175977 - 3177002 | 38394.1 |
| hypothetical protein | BACCOPRO_03233 | Not Available | Negative | 3177005 - 3177850 | 32058.2 |
| dna gyrase/topoisomerase iv, a subunit | BACCOPRO_03234 | Not Available | Negative | 3177855 - 3180488 | 101244.0 |
| mate efflux family protein | BACCOPRO_03235 | Not Available | Negative | 3180564 - 3181925 | 49593.9 |
| hypothetical protein | BACCOPRO_03237 | Not Available | Negative | 3182074 - 3182205 | 5387.29 |
| glycine--trna ligase | BACCOPRO_03236 | Not Available | Positive | 3182197 - 3183741 | 59556.3 |
| peptidyl-prolyl cis-trans isomerase, fkbp-type | BACCOPRO_03238 | Not Available | Positive | 3183760 - 3184389 | 23298.4 |
| heavy metal efflux pump, czca family | BACCOPRO_03239 | Not Available | Positive | 3184628 - 3188962 | 161609.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


