Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_00310 | Not Available | Positive | 324765 - 324890 | 4704.22 |
| tonb-linked outer membrane protein, susc/raga family | BACCOPRO_00311 | Not Available | Positive | 325188 - 328256 | 112612.0 |
| susd family protein | BACCOPRO_00312 | Not Available | Positive | 328282 - 329913 | 61438.8 |
| hypothetical protein | BACCOPRO_00313 | Not Available | Positive | 330048 - 331526 | 58397.2 |
| wd40-like protein | BACCOPRO_00314 | Not Available | Positive | 331501 - 332994 | 55953.9 |
| glycosyl hydrolase family 3 n-terminal domain protein | BACCOPRO_00315 | Not Available | Positive | 333062 - 333856 | 29458.1 |
| glycosyl hydrolase family 3 c-terminal domain protein | BACCOPRO_00316 | Not Available | Positive | 333846 - 335666 | 68339.7 |
| hypothetical protein | BACCOPRO_00317 | Not Available | Positive | 335810 - 337576 | 68033.8 |
| wd40-like protein | BACCOPRO_00318 | Not Available | Positive | 337576 - 339045 | 56028.5 |
| hypothetical protein | BACCOPRO_00319 | Not Available | Positive | 339155 - 339487 | 12451.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


