Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-hydroxyacyl-(acyl-carrier-protein) dehydratase fabz | BACCOPRO_03150 | Not Available | Negative | 3080794 - 3082179 | 51370.4 |
| udp-3-o-[3-hydroxymyristoyl] glucosamine n-acyltransferase | BACCOPRO_03151 | Not Available | Negative | 3082184 - 3083224 | 37131.5 |
| hypothetical protein | BACCOPRO_03152 | Not Available | Positive | 3083305 - 3083481 | 7087.76 |
| orotidine 5'-phosphate decarboxylase | BACCOPRO_03153 | Not Available | Negative | 3083491 - 3084315 | 31028.2 |
| putative peptide chain release factor 1 | BACCOPRO_03154 | Not Available | Negative | 3084357 - 3085466 | 41563.2 |
| hypothetical protein | BACCOPRO_03155 | Not Available | Negative | 3085740 - 3086891 | 42020.4 |
| hypothetical protein | BACCOPRO_03156 | Not Available | Negative | 3086993 - 3088675 | 64562.4 |
| hypothetical protein | BACCOPRO_03157 | Not Available | Positive | 3088705 - 3089085 | 13630.4 |
| hypothetical protein | BACCOPRO_03158 | Not Available | Positive | 3089107 - 3090351 | 45720.1 |
| hypothetical protein | BACCOPRO_03159 | Not Available | Negative | 3090508 - 3092436 | 72936.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


