Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| class ii glutamine amidotransferase | BACCOPRO_03110 | Not Available | Positive | 3031692 - 3033575 | 71415.6 |
| carbamoyl-phosphate synthase, small subunit | BACCOPRO_03111 | Not Available | Positive | 3033628 - 3034704 | 40070.6 |
| carbamoyl-phosphate synthase, large subunit | BACCOPRO_03112 | Not Available | Positive | 3034728 - 3037955 | 119814.0 |
| crispr-associated protein, csn1 family | BACCOPRO_03113 | Not Available | Positive | 3038251 - 3042780 | 176064.0 |
| crispr-associated endonuclease cas1, nmeni subtype | BACCOPRO_03114 | Not Available | Positive | 3042785 - 3043717 | 35102.8 |
| crispr-associated endoribonuclease cas2 | BACCOPRO_03115 | Not Available | Positive | 3043717 - 3044016 | 11884.3 |
| hypothetical protein | BACCOPRO_03116 | Not Available | Positive | 3045852 - 3045974 | 4530.4 |
| hypothetical protein | BACCOPRO_03117 | Not Available | Positive | 3045971 - 3046159 | 6951.46 |
| hypothetical protein | BACCOPRO_03118 | Not Available | Negative | 3046137 - 3046766 | 24208.2 |
| nlpc/p60 family protein | BACCOPRO_03119 | Not Available | Negative | 3046721 - 3047224 | 18439.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


