Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-trp | Not Available | Not Available | Positive | 310933 - 311008 | Not Available |
| preprotein translocase, sece subunit | BACCOPRO_00301 | Not Available | Positive | 311022 - 311216 | 7257.84 |
| transcription termination/antitermination factor nusg | BACCOPRO_00302 | Not Available | Positive | 311229 - 311771 | 20175.4 |
| ribosomal protein l11 | BACCOPRO_00303 | Not Available | Positive | 311834 - 312277 | 15709.3 |
| ribosomal protein l1 | BACCOPRO_00304 | Not Available | Positive | 312294 - 312992 | 24920.7 |
| ribosomal protein l10 | BACCOPRO_00305 | Not Available | Positive | 313007 - 313522 | 18447.4 |
| ribosomal protein l7/l12 | BACCOPRO_00306 | Not Available | Positive | 313602 - 313979 | 12721.2 |
| dna-directed rna polymerase, beta subunit | BACCOPRO_00307 | Not Available | Positive | 314119 - 317931 | 142597.0 |
| dna-directed rna polymerase, beta' subunit | BACCOPRO_00308 | Not Available | Positive | 318025 - 322311 | 158874.0 |
| hypothetical protein | BACCOPRO_00309 | Not Available | Negative | 322417 - 324546 | 79196.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


