Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_03030 | Not Available | Positive | 2980296 - 2980502 | 7901.25 |
| is66 family element, transposase | BACCOPRO_03031 | Not Available | Positive | 2980459 - 2981814 | 51818.5 |
| hypothetical protein | BACCOPRO_03032 | Not Available | Positive | 2982327 - 2982512 | 7303.75 |
| hypothetical protein | BACCOPRO_03033 | Not Available | Positive | 2982505 - 2982759 | 9584.8 |
| nucleotidyltransferase domain protein | BACCOPRO_03034 | Not Available | Positive | 2982782 - 2983651 | 32762.1 |
| methyltransferase domain protein | BACCOPRO_03035 | Not Available | Positive | 2983632 - 2984372 | 28550.4 |
| hd domain protein | BACCOPRO_03036 | Not Available | Positive | 2984410 - 2984904 | 18871.9 |
| hypothetical protein | BACCOPRO_03037 | Not Available | Negative | 2985064 - 2985516 | 17612.4 |
| hypothetical protein | BACCOPRO_03038 | Not Available | Negative | 2985557 - 2985859 | 11311.0 |
| hypothetical protein | BACCOPRO_03039 | Not Available | Positive | 2986003 - 2986146 | 5610.87 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


