Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux transporter, rnd family, mfp subunit | BACCOPRO_02990 | Not Available | Negative | 2944973 - 2946067 | 40862.4 |
| chaperone protein dnak | BACCOPRO_02991 | Not Available | Positive | 2946373 - 2948268 | 67531.1 |
| transcriptional regulator, merr family | BACCOPRO_02992 | Not Available | Positive | 2948470 - 2949036 | 22155.2 |
| site-specific recombinase, phage integrase family | BACCOPRO_02993 | Not Available | Positive | 2949033 - 2950280 | 48328.2 |
| hypothetical protein | BACCOPRO_02994 | Not Available | Positive | 2950517 - 2951245 | 28244.0 |
| dna binding domain, excisionase family | BACCOPRO_02995 | Not Available | Positive | 2951379 - 2951747 | 14432.2 |
| dna binding domain, excisionase family | BACCOPRO_02996 | Not Available | Positive | 2951791 - 2952132 | 13328.3 |
| hypothetical protein | BACCOPRO_02997 | Not Available | Positive | 2952129 - 2953241 | 42178.2 |
| chc2 zinc finger domain protein | BACCOPRO_02998 | Not Available | Positive | 2953442 - 2954341 | 34979.7 |
| hypothetical protein | BACCOPRO_02999 | Not Available | Positive | 2954498 - 2955469 | 36891.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


