Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-deoxy-d-manno-octulosonic-acid transferase | BACCOPRO_00290 | Not Available | Positive | 304069 - 305289 | 46473.0 |
| bacterial transferase hexapeptide repeat protein | BACCOPRO_00291 | Not Available | Negative | 305354 - 305884 | 19046.8 |
| creatinase | BACCOPRO_00292 | Not Available | Negative | 305925 - 307706 | 67212.6 |
| ribosomal protein s21 | BACCOPRO_00293 | Not Available | Positive | 307863 - 308054 | 7581.51 |
| phage integrase sam-like domain protein | BACCOPRO_00294 | Not Available | Positive | 308130 - 308432 | 11746.7 |
| site-specific recombinase, phage integrase family | BACCOPRO_00295 | Not Available | Positive | 308392 - 309015 | 23829.9 |
| putative ribosomal subunit interface protein | BACCOPRO_00296 | Not Available | Positive | 308990 - 309331 | 13080.1 |
| Trna-thr | Not Available | Not Available | Positive | 309425 - 309501 | Not Available |
| Trna-thr | Not Available | Not Available | Positive | 309568 - 309639 | Not Available |
| translation elongation factor tu | BACCOPRO_00299 | Not Available | Positive | 309690 - 310874 | 43550.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


