Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_02980 | Not Available | Positive | 2932353 - 2934830 | 93303.4 |
| reca protein | BACCOPRO_02981 | Not Available | Negative | 2934888 - 2935940 | 37874.3 |
| antioxidant, ahpc/tsa family | BACCOPRO_02982 | Not Available | Negative | 2935968 - 2936417 | 17232.8 |
| saccharopine dehydrogenase | BACCOPRO_02983 | Not Available | Negative | 2936522 - 2937715 | 44924.4 |
| meta domain protein | BACCOPRO_02984 | Not Available | Positive | 2937853 - 2938659 | 28519.5 |
| lyttr dna-binding domain protein | BACCOPRO_02985 | Not Available | Negative | 2938722 - 2939498 | 30221.4 |
| hypothetical protein | BACCOPRO_02986 | Not Available | Negative | 2939491 - 2939974 | 18730.0 |
| hypothetical protein | BACCOPRO_02987 | Not Available | Negative | 2939975 - 2940345 | 14575.2 |
| outer membrane efflux protein | BACCOPRO_02988 | Not Available | Negative | 2940353 - 2941960 | 61028.6 |
| rnd transporter, hae1/hme family, permease protein | BACCOPRO_02989 | Not Available | Negative | 2941938 - 2944964 | 112490.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


