Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_02960 | Not Available | Positive | 2913812 - 2914816 | 36385.4 |
| tryptophan synthase, beta subunit | BACCOPRO_02961 | Not Available | Negative | 2914825 - 2916021 | 44035.8 |
| hypothetical protein | BACCOPRO_02962 | Not Available | Negative | 2916018 - 2916137 | 4704.8 |
| hypothetical protein | BACCOPRO_02963 | Not Available | Negative | 2916403 - 2916675 | 10493.6 |
| peptidase dimerization domain protein | BACCOPRO_02964 | Not Available | Negative | 2916706 - 2918070 | 50643.6 |
| putative chorismate synthase | BACCOPRO_02965 | Not Available | Negative | 2918087 - 2918458 | 13530.3 |
| putative chorismate synthase | BACCOPRO_02966 | Not Available | Negative | 2918452 - 2919165 | 26253.8 |
| hypothetical protein | BACCOPRO_02967 | Not Available | Negative | 2919221 - 2920150 | 33470.3 |
| lema family protein | BACCOPRO_02968 | Not Available | Negative | 2920159 - 2920740 | 21561.7 |
| mip family channel protein | BACCOPRO_02969 | Not Available | Positive | 2921086 - 2921763 | 23070.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


