Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetratricopeptide repeat protein | BACCOPRO_02950 | Not Available | Negative | 2905251 - 2905526 | 10329.2 |
| atpase/histidine kinase/dna gyrase b/hsp90 domain protein | BACCOPRO_02951 | Not Available | Negative | 2905863 - 2907662 | 69135.3 |
| response regulator receiver domain protein | BACCOPRO_02952 | Not Available | Negative | 2907655 - 2908341 | 26328.0 |
| l-asparaginase, type i | BACCOPRO_02953 | Not Available | Negative | 2908443 - 2909492 | 39010.1 |
| tryptophan synthase, alpha subunit | BACCOPRO_02954 | Not Available | Negative | 2909606 - 2910382 | 28867.9 |
| n-(5'phosphoribosyl)anthranilate isomerase | BACCOPRO_02955 | Not Available | Negative | 2910379 - 2910996 | 23412.9 |
| indole-3-glycerol phosphate synthase | BACCOPRO_02956 | Not Available | Negative | 2910993 - 2911781 | 29116.1 |
| anthranilate phosphoribosyltransferase | BACCOPRO_02957 | Not Available | Negative | 2911794 - 2912789 | 36456.9 |
| glutamine amidotransferase, class i | BACCOPRO_02958 | Not Available | Negative | 2912837 - 2913400 | 20877.1 |
| chorismate binding enzyme | BACCOPRO_02959 | Not Available | Negative | 2913410 - 2913811 | 14519.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


