Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_02940 | Not Available | Negative | 2897040 - 2898197 | 44400.8 |
| oxidoreductase, nad-binding domain protein | BACCOPRO_02941 | Not Available | Negative | 2898214 - 2899209 | 37025.5 |
| putative membrane-bound lytic murein transglycosylase f | BACCOPRO_02942 | Not Available | Negative | 2899221 - 2900039 | 31109.5 |
| hypothetical protein | BACCOPRO_02944 | Not Available | Negative | 2900045 - 2902174 | 81711.9 |
| hypothetical protein | BACCOPRO_02943 | Not Available | Positive | 2902122 - 2902307 | 7062.66 |
| 2-oxoacid:ferredoxin/flavodoxin oxidoreductase, gamma subunit | BACCOPRO_02945 | Not Available | Negative | 2902347 - 2902889 | 19929.7 |
| thiamine pyrophosphate enzyme, c-terminal tpp binding domain protein | BACCOPRO_02946 | Not Available | Negative | 2902907 - 2903758 | 31349.9 |
| hypothetical protein | BACCOPRO_02947 | Not Available | Negative | 2903698 - 2903874 | 6725.47 |
| pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine dip-binding domain protein | BACCOPRO_02948 | Not Available | Negative | 2903885 - 2904964 | 39072.5 |
| 4fe-4s binding domain protein | BACCOPRO_02949 | Not Available | Negative | 2905000 - 2905230 | 8152.06 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


