Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dephospho-coa kinase | BACCOPRO_02920 | Not Available | Positive | 2876132 - 2876734 | 22677.6 |
| hypothetical protein | BACCOPRO_02921 | Not Available | Positive | 2876801 - 2877211 | 15088.2 |
| ompa family protein | BACCOPRO_02922 | Not Available | Negative | 2877291 - 2878433 | 41627.5 |
| atp-dependent chaperone protein clpb | BACCOPRO_02923 | Not Available | Negative | 2878568 - 2881156 | 97565.8 |
| hypothetical protein | BACCOPRO_02924 | Not Available | Positive | 2881499 - 2881933 | 16143.3 |
| hypothetical protein | BACCOPRO_02925 | Not Available | Positive | 2881920 - 2882504 | 21586.2 |
| lysr substrate binding domain protein | BACCOPRO_02926 | Not Available | Positive | 2882514 - 2883419 | 34489.0 |
| putative radical sam protein ygiq | BACCOPRO_02927 | Not Available | Negative | 2883424 - 2885235 | 69692.2 |
| hypothetical protein | BACCOPRO_02928 | Not Available | Negative | 2885269 - 2885550 | 10905.0 |
| fibronectin type iii domain protein | BACCOPRO_02929 | Not Available | Negative | 2885662 - 2886915 | 45788.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


