Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidase t | BACCOPRO_02910 | Not Available | Positive | 2866223 - 2867461 | 45649.6 |
| aminomethyltransferase | BACCOPRO_02911 | Not Available | Positive | 2867616 - 2868701 | 39760.5 |
| trka c-terminal domain protein | BACCOPRO_02912 | Not Available | Positive | 2868881 - 2871196 | 85164.7 |
| s4 domain protein | BACCOPRO_02913 | Not Available | Negative | 2871304 - 2871735 | 16449.7 |
| aminoacyl-trna hydrolase | BACCOPRO_02914 | Not Available | Negative | 2871748 - 2872311 | 20728.2 |
| ribosomal protein l25, ctc-form | BACCOPRO_02915 | Not Available | Negative | 2872349 - 2872945 | 21415.3 |
| hypothetical protein | BACCOPRO_02916 | Not Available | Negative | 2873261 - 2873662 | 15508.4 |
| transcription antitermination factor nusb | BACCOPRO_02917 | Not Available | Positive | 2873828 - 2874754 | 36206.3 |
| preprotein translocase, yajc subunit | BACCOPRO_02918 | Not Available | Positive | 2874799 - 2875107 | 11319.0 |
| ybbr-like protein | BACCOPRO_02919 | Not Available | Positive | 2875120 - 2876139 | 39150.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


