Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_02890 | Not Available | Negative | 2843177 - 2843602 | 15844.1 |
| hypothetical protein | BACCOPRO_02891 | Not Available | Negative | 2843880 - 2845038 | 44793.7 |
| Trna-ser | Not Available | Not Available | Positive | 2845216 - 2845303 | Not Available |
| muts2 family protein | BACCOPRO_02893 | Not Available | Positive | 2845467 - 2847971 | 95133.2 |
| l-serine ammonia-lyase | BACCOPRO_02894 | Not Available | Positive | 2848112 - 2849263 | 41455.3 |
| had hydrolase, family ia, variant 1 | BACCOPRO_02895 | Not Available | Positive | 2849292 - 2849936 | 23946.8 |
| ribosomal protein l21 | BACCOPRO_02896 | Not Available | Positive | 2850094 - 2850411 | 11754.3 |
| ribosomal protein l27 | BACCOPRO_02897 | Not Available | Positive | 2850433 - 2850693 | 9029.85 |
| yceg family protein | BACCOPRO_02898 | Not Available | Positive | 2850784 - 2851815 | 39188.8 |
| pyridoxal-phosphate dependent trpb-like enzyme | BACCOPRO_02899 | Not Available | Positive | 2851977 - 2853341 | 50458.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


