Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_02860 | Not Available | Positive | 2805293 - 2805928 | 24031.0 |
| ssra-binding protein | BACCOPRO_02861 | Not Available | Positive | 2805928 - 2806389 | 17955.9 |
| 5-methyltetrahydrofolate--homocysteine methyltransferase | BACCOPRO_02862 | Not Available | Positive | 2806393 - 2809140 | 100585.0 |
| tetratricopeptide repeat protein | BACCOPRO_02863 | Not Available | Positive | 2809388 - 2810698 | 51090.3 |
| nucleotidyl transferase | BACCOPRO_02864 | Not Available | Negative | 2810718 - 2811455 | 27998.8 |
| phosphotransferase enzyme family | BACCOPRO_02865 | Not Available | Negative | 2811470 - 2812891 | 55009.2 |
| antioxidant, ahpc/tsa family | BACCOPRO_02866 | Not Available | Positive | 2812983 - 2813990 | 37702.0 |
| excinuclease abc, a subunit | BACCOPRO_02867 | Not Available | Negative | 2814113 - 2816887 | 104047.0 |
| hypothetical protein | BACCOPRO_02868 | Not Available | Positive | 2816971 - 2818479 | 58466.0 |
| hydrolase, nudix family | BACCOPRO_02869 | Not Available | Positive | 2818491 - 2819045 | 21420.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


