Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lyttr dna-binding domain protein | BACCOPRO_02840 | Not Available | Positive | 2790651 - 2791349 | 26437.2 |
| hypothetical protein | BACCOPRO_02841 | Not Available | Positive | 2791717 - 2792028 | 11580.7 |
| transcriptional regulator, arac family | BACCOPRO_02842 | Not Available | Negative | 2792257 - 2793135 | 33696.4 |
| drug resistance transporter, bcr/cfla subfamily | BACCOPRO_02843 | Not Available | Positive | 2793281 - 2794474 | 42487.9 |
| hypothetical protein | BACCOPRO_02844 | Not Available | Positive | 2794588 - 2795028 | 16888.7 |
| peptidase, m48 family | BACCOPRO_02845 | Not Available | Positive | 2795046 - 2795849 | 29454.3 |
| outer membrane insertion signal domain protein | BACCOPRO_02846 | Not Available | Positive | 2795958 - 2796743 | 28801.0 |
| hypothetical protein | BACCOPRO_02847 | Not Available | Positive | 2796747 - 2796881 | 5184.34 |
| hypothetical protein | BACCOPRO_02848 | Not Available | Negative | 2796913 - 2797167 | 10060.4 |
| hypothetical protein | BACCOPRO_02849 | Not Available | Negative | 2797175 - 2797438 | 10604.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


