Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_02820 | Not Available | Negative | 2772822 - 2773088 | 10322.5 |
| putative dna-binding protein | BACCOPRO_02821 | Not Available | Positive | 2773140 - 2773775 | 24012.1 |
| hypothetical protein | BACCOPRO_02822 | Not Available | Positive | 2773775 - 2774920 | 42666.0 |
| o-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase | BACCOPRO_02823 | Not Available | Negative | 2774931 - 2776217 | 46407.0 |
| hypothetical protein | BACCOPRO_02824 | Not Available | Positive | 2776284 - 2776437 | 6091.44 |
| transcriptional regulator, asnc family | BACCOPRO_02825 | Not Available | Positive | 2776438 - 2776877 | 16721.5 |
| putative prephenate dehydrogenase | BACCOPRO_02826 | Not Available | Negative | 2776955 - 2777728 | 29498.6 |
| putative 3-deoxy-7-phosphoheptulonate synthase | BACCOPRO_02827 | Not Available | Negative | 2777746 - 2778813 | 39936.4 |
| aminotransferase, class i/ii | BACCOPRO_02828 | Not Available | Negative | 2778835 - 2780019 | 44952.0 |
| prephenate dehydratase | BACCOPRO_02829 | Not Available | Negative | 2779994 - 2780836 | 31815.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


