Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| o-succinylbenzoic acid--coa ligase | BACCOPRO_02810 | Not Available | Negative | 2759005 - 2760150 | 42505.9 |
| mandelate racemase/muconate lactonizing enzyme, c-terminal domain protein | BACCOPRO_02811 | Not Available | Negative | 2760143 - 2760994 | 31723.0 |
| naphthoate synthase | BACCOPRO_02812 | Not Available | Negative | 2761368 - 2762192 | 30329.7 |
| 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase | BACCOPRO_02813 | Not Available | Negative | 2762206 - 2763873 | 62023.5 |
| isochorismate synthase | BACCOPRO_02814 | Not Available | Negative | 2763877 - 2764959 | 40274.2 |
| hypothetical protein | BACCOPRO_02815 | Not Available | Negative | 2764956 - 2765375 | 14800.1 |
| f5/8 type c domain protein | BACCOPRO_02816 | Not Available | Negative | 2765561 - 2767450 | 71193.9 |
| susd family protein | BACCOPRO_02817 | Not Available | Negative | 2767569 - 2769257 | 64475.0 |
| tonb-linked outer membrane protein, susc/raga family | BACCOPRO_02818 | Not Available | Negative | 2769280 - 2772478 | 118871.0 |
| hypothetical protein | BACCOPRO_02819 | Not Available | Negative | 2772487 - 2772627 | 5589.92 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


