Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadh-ubiquinone/plastoquinone oxidoreductase chain 6 | BACCOPRO_02800 | Not Available | Negative | 2748320 - 2748835 | 18432.6 |
| 4fe-4s binding domain protein | BACCOPRO_02801 | Not Available | Negative | 2748848 - 2749315 | 17683.3 |
| nadh dehydrogenase | BACCOPRO_02802 | Not Available | Negative | 2749349 - 2750440 | 40137.4 |
| respiratory-chain nadh dehydrogenase, 49 kd subunit | BACCOPRO_02803 | Not Available | Negative | 2750477 - 2752099 | 61615.7 |
| nadh-quinone oxidoreductase, b subunit | BACCOPRO_02804 | Not Available | Negative | 2752124 - 2752726 | 22736.7 |
| nadh-ubiquinone/plastoquinone oxidoreductase, chain 3 | BACCOPRO_02805 | Not Available | Negative | 2752717 - 2753067 | 12888.2 |
| hypothetical protein | BACCOPRO_02806 | Not Available | Negative | 2753186 - 2753581 | 14788.9 |
| tetratricopeptide repeat protein | BACCOPRO_02807 | Not Available | Negative | 2753768 - 2755948 | 85470.3 |
| hypothetical protein | BACCOPRO_02808 | Not Available | Positive | 2756026 - 2756832 | 30733.3 |
| transporter, cpa2 family | BACCOPRO_02809 | Not Available | Negative | 2756835 - 2758967 | 80389.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


