Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polysaccharide biosynthesis protein | BACCOPRO_00270 | Not Available | Positive | 281849 - 283339 | 56256.2 |
| hydrophobic domain protein | BACCOPRO_00271 | Not Available | Positive | 283355 - 284716 | 50729.5 |
| dead/deah box helicase | BACCOPRO_00272 | Not Available | Negative | 284805 - 286718 | 72097.0 |
| hypothetical protein | BACCOPRO_00273 | Not Available | Negative | 286808 - 287023 | 7901.83 |
| hypothetical protein | BACCOPRO_00274 | Not Available | Negative | 287035 - 287685 | 24257.9 |
| caax amino terminal protease family protein | BACCOPRO_00275 | Not Available | Negative | 287697 - 288521 | 30273.8 |
| riboflavin biosynthesis protein ribf | BACCOPRO_00276 | Not Available | Negative | 288742 - 289665 | 35121.6 |
| had hydrolase, family ia, variant 3 | BACCOPRO_00277 | Not Available | Negative | 289670 - 290284 | 23330.8 |
| calcium-translocating p-type atpase, pmca-type | BACCOPRO_00278 | Not Available | Negative | 290284 - 293022 | 100861.0 |
| Trna-met | Not Available | Not Available | Positive | 293067 - 293143 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


