Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hydroxyisourate hydrolase | BACCOPRO_02740 | Not Available | Positive | 2692843 - 2694105 | 46566.1 |
| hypothetical protein | BACCOPRO_02741 | Not Available | Positive | 2694300 - 2694446 | 5754.05 |
| atp-dependent dna helicase, recq family | BACCOPRO_02742 | Not Available | Negative | 2694585 - 2696486 | 73123.0 |
| single-stranded-dna-specific exonuclease recj | BACCOPRO_02743 | Not Available | Negative | 2696489 - 2698210 | 65020.8 |
| peptidase c1-like family | BACCOPRO_02744 | Not Available | Negative | 2698412 - 2699605 | 44635.8 |
| aminopeptidase p domain protein | BACCOPRO_02745 | Not Available | Negative | 2699646 - 2701037 | 51715.7 |
| phospholipase, patatin family | BACCOPRO_02746 | Not Available | Positive | 2701162 - 2702022 | 33200.6 |
| ymda/ytgf family protein | BACCOPRO_02747 | Not Available | Negative | 2702171 - 2703706 | 57404.6 |
| hypothetical protein | BACCOPRO_02748 | Not Available | Negative | 2703812 - 2704153 | 13518.1 |
| hypothetical protein | BACCOPRO_02749 | Not Available | Negative | 2704146 - 2704511 | 14347.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


