Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative d-tyrosyl-trna(tyr) deacylase | BACCOPRO_02720 | Not Available | Negative | 2671023 - 2672396 | 52494.9 |
| hypothetical protein | BACCOPRO_02721 | Not Available | Negative | 2672402 - 2673259 | 33133.7 |
| hypothetical protein | BACCOPRO_02722 | Not Available | Negative | 2673295 - 2674674 | 52949.7 |
| inosine-5'-monophosphate dehydrogenase | BACCOPRO_02723 | Not Available | Negative | 2674747 - 2676222 | 52571.6 |
| atp-dependent dna helicase recq | BACCOPRO_02724 | Not Available | Negative | 2676377 - 2678560 | 82103.1 |
| atp-dependent clp protease, atp-binding subunit clpx | BACCOPRO_02725 | Not Available | Negative | 2678699 - 2679859 | 43177.5 |
| endopeptidase clp | BACCOPRO_02726 | Not Available | Negative | 2679984 - 2680658 | 24923.9 |
| trigger factor | BACCOPRO_02727 | Not Available | Negative | 2680822 - 2682168 | 51196.9 |
| abc transporter, atp-binding protein | BACCOPRO_02728 | Not Available | Negative | 2682339 - 2683154 | 30873.2 |
| hypothetical protein | BACCOPRO_02729 | Not Available | Positive | 2683289 - 2684032 | 27385.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


