Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-lys | Not Available | Not Available | Positive | 2639752 - 2639827 | Not Available |
| hypothetical protein | BACCOPRO_02691 | Not Available | Negative | 2639997 - 2640206 | 7708.33 |
| hypothetical protein | BACCOPRO_02692 | Not Available | Negative | 2640249 - 2641154 | 33530.1 |
| hypothetical protein | BACCOPRO_02693 | Not Available | Positive | 2641284 - 2645894 | 170098.0 |
| outer membrane protein, omp85 family | BACCOPRO_02694 | Not Available | Positive | 2645860 - 2648211 | 89663.9 |
| peptidyl-prolyl cis-trans isomerase, cyclophilin-type | BACCOPRO_02695 | Not Available | Positive | 2648243 - 2649094 | 31653.9 |
| peptidase m16 inactive domain protein | BACCOPRO_02696 | Not Available | Positive | 2649126 - 2650364 | 47512.1 |
| mate efflux family protein | BACCOPRO_02697 | Not Available | Positive | 2650361 - 2651680 | 48419.5 |
| atpase/histidine kinase/dna gyrase b/hsp90 domain protein | BACCOPRO_02698 | Not Available | Positive | 2651687 - 2654194 | 94734.0 |
| hypothetical protein | BACCOPRO_02700 | Not Available | Negative | 2654187 - 2654330 | 5487.84 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


