Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arginine--trna ligase | BACCOPRO_00260 | Not Available | Negative | 271696 - 273513 | 68261.2 |
| hypothetical protein | BACCOPRO_00261 | Not Available | Negative | 273703 - 273834 | 5250.46 |
| sigma-70 region 2 | BACCOPRO_00262 | Not Available | Negative | 274089 - 274601 | 20215.1 |
| transcriptional regulator, arac family | BACCOPRO_00263 | Not Available | Negative | 274760 - 275887 | 43394.9 |
| peptidase m16 inactive domain protein | BACCOPRO_00264 | Not Available | Negative | 276138 - 277373 | 47225.9 |
| tigr00730 family protein | BACCOPRO_00265 | Not Available | Positive | 277430 - 278008 | 21462.8 |
| sis domain protein | BACCOPRO_00266 | Not Available | Positive | 278033 - 278635 | 21669.4 |
| trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase | BACCOPRO_00267 | Not Available | Negative | 278740 - 279876 | 42924.7 |
| 4fe-4s binding domain protein | BACCOPRO_00268 | Not Available | Negative | 279884 - 280669 | 28460.2 |
| holliday junction dna helicase ruvb | BACCOPRO_00269 | Not Available | Positive | 280746 - 281771 | 37804.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


