Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | BACCOPRO_02680 | Not Available | Negative | 2625895 - 2628933 | 111361.0 |
| site-specific recombinase, phage integrase family | BACCOPRO_02681 | Not Available | Positive | 2629275 - 2630456 | 46880.7 |
| tonb-linked outer membrane protein, susc/raga family | BACCOPRO_02682 | Not Available | Positive | 2630735 - 2633722 | 111239.0 |
| susd family protein | BACCOPRO_02683 | Not Available | Positive | 2633723 - 2635288 | 58425.7 |
| hypothetical protein | BACCOPRO_02684 | Not Available | Positive | 2635306 - 2636091 | 27407.0 |
| hypothetical protein | BACCOPRO_02685 | Not Available | Negative | 2636182 - 2637033 | 32067.1 |
| s-adenosylmethionine-dependent methyltransferase, yral family | BACCOPRO_02686 | Not Available | Negative | 2637059 - 2637733 | 24858.2 |
| hypothetical protein | BACCOPRO_02688 | Not Available | Negative | 2637803 - 2637943 | 5684.12 |
| thymidine kinase | BACCOPRO_02687 | Not Available | Positive | 2637918 - 2638514 | 22144.6 |
| hypothetical protein | BACCOPRO_02689 | Not Available | Positive | 2638523 - 2639653 | 42438.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


