Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_02640 | Not Available | Negative | 2576104 - 2578407 | 85611.8 |
| hypothetical protein | BACCOPRO_02641 | Not Available | Positive | 2578437 - 2578565 | 4888.01 |
| putative phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolase | BACCOPRO_02642 | Not Available | Positive | 2578595 - 2580121 | 56223.1 |
| cell shape determining protein, mreb/mrl family | BACCOPRO_02643 | Not Available | Positive | 2580137 - 2581159 | 36932.9 |
| rod shape-determining protein mrec | BACCOPRO_02644 | Not Available | Positive | 2581156 - 2582007 | 31479.7 |
| rod shape-determining protein mred | BACCOPRO_02645 | Not Available | Positive | 2582052 - 2582540 | 18313.9 |
| penicillin-binding protein 2 | BACCOPRO_02646 | Not Available | Positive | 2582540 - 2584390 | 69161.6 |
| putative rod shape-determining protein roda | BACCOPRO_02647 | Not Available | Positive | 2584371 - 2585822 | 54219.6 |
| gliding motility-associated lipoprotein gldh | BACCOPRO_02648 | Not Available | Negative | 2585770 - 2586306 | 19489.1 |
| psp1 c-terminal domain protein | BACCOPRO_02649 | Not Available | Negative | 2586347 - 2587918 | 58290.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


